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A New Version of Plant-O-Matic 

11/8/2016

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There is a new version (1.3) of Plant-O-Matic available on the iTunes store. The update focuses on the user experience, including two new key features:

  • The ability to view a list of plant species from your own location, or choose a location from a map interface. 
  • A detailed page for each plant species in the list. This includes improvements to the photos of the species and access to text describing it drawn from Wikipedia. 
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These are modest changes a long time coming, but my hope is that they significantly improve the user experience.

​As we reported in our open access description of the methods underlying 
Plant-O-Matic, much of the information we make available to support the identification of the 88,000 species in the database is currently quite limited. This most recent update has revealed once again just how much of this information is missing; we have a lot of work to do in order to collate the available data and even more to do to fill the gaps where no data exists. We’re excited about the challenge. ​

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Chapman University

10/22/2016

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I am excited to be joining the faculty in the Department of Biological Sciences in the Schmid College of Science and Technology at Chapman University in fall 2017. In addition to teaching and research, I will also direct the Grand Challenges Initiative, a new program empowering undergraduates in the sciences with the interdisciplinary critical thinking and problem-solving skills that they need to solve problems of global importance.
 
The university is really a gem – I could not be more impressed by the administration, the faculty, and the students –and is engaging in some truly innovative initatives. Campus is beautiful and we have a brand new science and technology building coming online in 2018. There is a lot to be excited about.
 
In the near-term, I am happy to serve as a host for postdoctoral research associates and visiting scientists, please feel free to reach out if you are interested. 
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Postdoctoral Research Position in Stable Isotope Biogeochemistry

10/13/2016

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Jim Kirchner (ETH Zurich) and I are very excited to be advertising a postdoctoral research position focused on spatiotemporal patterns in soil water isotopes across Switzerland. The postdoctoral research associate will be based at ETH Zurich.  Additional details follow below. Feel free to reach out if you have any questions. 

Applications are invited for a postdoctoral research associate to conduct research focused on interpreting spatial and temporal patterns in soil water isotopes. The project leverages a unique long‐term water isotope data set collected throughout Switzerland. The long‐term goal of the project is to use environmental water isotopes to improve our understanding of soil water storage and plant water relations in a manner that can inform environmental decision‐making.

The successful candidate will be an independent and highly motivated scientist with a strong background in environmental water isotopes and/or stable isotope biogeochemistry. Additional expertise in geospatial statistics, (eco)hydrology, or soil physics is particularly welcome.

The research associate will be based in the Department of Environmental Systems Science at ETH Zurich, Switzerland, and will be co‐supervised by James Kirchner (ETH) and Greg Goldsmith (Paul Scherrer Institute & Chapman University).
As Europe's leading technical university, ETH Zurich has excellent infrastructure and research support. Collaborative links with other Swiss universities and federal research institutes provide additional depth and breadth in ecohydrology and biogeochemistry, and the Swiss landscape is an unparalleled natural laboratory.

The initial appointment is for two years with the possibility for extension. Applicants should supply a single PDF containing:

‐ a statement of their research interests, experience and technical background
‐ a CV and complete list of publications
‐ and contact information for three references.


Applicants may also supply up to three (but no more) examples of their best published work, again as PDFs. Applicants who are attending AGU and are available for interviews there should note this in their applications.

As part of the ETH's efforts to promote women in science, qualified female researchers are particularly encouraged to apply. Applications should be sent to apply_PES@env.ethz.ch

Review of applications will begin 15 November 2016 and continue until the position is filled. 

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What if leaf drip tips had nothing to do with rain?

9/18/2016

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Leaf drip tips are one of those features of tropical rain forests that always draws the eye. Walking through the forest during a hard rain, it just seems so obvious that drip tips- long narrow tips on the end of the leaves -must be associated with....drip. 
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In a new paper published in New Phytologist, my collaborators and I explore drip tips in the larger context of traits associated with leaf wettability. Plants in tropical rain forests frequently get wet. Wet leaf surfaces are considered bad for plant function. For instance, wet leaves have long been associated with increasing pathogen establishment and growth, decreasing rates of photosynthesis, and leaching nutrients out of the leaf. Drip tips are thought to increase the rate at which leaves dry by funneling water off of the leaf surface. 

The problem with this idea is that no one can really find any evidence that it works.

We demonstrate that drip tips do not vary with rainfall, but rather with temperature. The warmer the forest, the higher the proportion of species with drip tips. In fact, we also demonstrate that leaf water repellency, a trait that describes the hydrophobicity of the leaf surface, also does not vary with rainfall. The most hydrophobic leaves appear to occur in cold and dry environments, rather than warm wet environments where it would be beneficial to be hydrophobic.

What does all this mean? One possibility is that wet environments simply do not impair plant function as much as we might imagine. A second possibility is that we are measuring the wrong traits. 

As far as drip tips are concerned, the best evidence I can find suggests that they may simply be a function of leaf development - the formation of a long central vein followed by expansion of the remainder of the leaf.

Maybe it's time to stop calling them drip tips...

Goldsmith, G.R., L.P. Bentley, A. Shenkin, N. Salinas-Revilla, B. Blonder, R.E. Martin, R. Castro-Ccossco, P. Chambi-Porroa, S. Diaz, B.J. Enquist, G.P. Asner, & Y. Malhi. In Press Variation in leaf wettability traits along a tropical montane elevation gradient. New Phytologist DOI: 10.1111/nph.14121​

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Leaf Boundary Layer Conductance - Estimates for Gas Exchange Calculations

6/5/2016

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​As part of a series of plant gas exchange measurements I have been making in collaboration with Rolf Siegwolf and Lucas Cernusak, we have estimated boundary layer conductance in the Walz gas exchange system that we are using. As a contribution for the common good, I thought I would make those estimates available.
 
The estimates are made for a Walz 3010GWK gas exchange chamber with and without their new elbow flange. We measured conductance to water vapor as the evaporative flux from a saturated piece of filter paper cut into the shape of a poplar leaf with different fan speeds. To do so, we cut two pieces of filter paper, made a thin slit in one, and inserted the thermocouple between the two pieces in the leaf cuvette.
 
The results show that the new flange makes an overwhelming difference in removing the boundary layer and increasing conductance. There are modest differences in leaf size, but this is largely due to the difficulty of keeping the smaller leaf saturated at high fan speeds. Overall, these estimates may be lower than those made in other systems, particularly in comparison to smaller leaf cuvettes, but the result is still a very low resistance.
 
If you have questions or would like access to the raw data, please do not hesitate to contact me. 

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Jet Air Dryers

5/2/2016

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​I have not thought much about how I dry my hands, beyond knowing that doing so is important for hygiene.
 
A new paper in the Journal of Applied Microbiology demonstrates that not all methods are created equal. And the differences are not what you might expect. Rather, they have to do with the extent to which bacteria and viruses become airborne based on the method- paper towel, warm air dryer or jet air dryer –that you use. The authors demonstrate that the jet air dryer they use results in a much higher concentration of bacteria in the air than other methods. This bacteria persists up to 1 meter away from the dryer in the air for about 10-15 minutes. The paper has some notable and surprising issues with statistical replication (there is spatial and temporal autocorrelation in the data and t-tests are incorrectly applied) that detracts from its credibility, but the data largely speak for themselves.
 
The implication of the study is that it is not in our best public health interest to use jet air dryers given their potential for disease transmission. There is now a critical need for additional studies with added realism – does replacing paper towel with jet air dryers in an entire university increase disease transmission?
 
I was excited by the advent of jet air dryers, particularly given the ecological implications of using paper towel, but this will certainly warrant our attention on a hot crowded planet. 
 
Kimmitt PJ & KF Redway. 2016. Evaluation of the potential for virus dispersal during hand drying: a comparison of three methods. Journal of Applied Microbiology 120:478-486. 
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National Geographic Student Expeditions in Ecuador

4/23/2016

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PicturePlanting trees with students on the Pacific Slope of Costa Rica, where deforestation for cattle grazing has had severe effects on the region's biodiversity. Photo courtesy C. Crinnion.
One of the highlights of 2015 was the opportunity to spend a few days with students on National Geographic's student expedition to Costa Rica. I had so much fun - I think I learned more from the students than they did from me.

​​I am excited to be joining two trips to Ecuador again this summer as a guest expert. We'll be exploring the cloud forests near Mindo and the Páramo near Cotopaxi together and I am looking forward to it! 

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Listening to Climate Change

2/18/2016

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The top podcasts in the science and medicine category on iTunes this week include Neil deGrasse Tyson's StarTalk Radio and Jim Harold's The Paranormal Podcast. You can find almost every other possible subject in between. So what makes someone tune in to listen to a podcast about climate change?

I consider this question in a review of a fantastic podcast called The Adaptors. The review is published in this week's Books et al. section of Science. 

Thanks to J. Catanoso, B. Anderegg and P. Lopes for comments on the review. 

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The Phylomemetics of Creationism  and Intelligent Design

1/23/2016

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I had definitely not heard of phylomemetics before reading Nick Matzke's recent paper on the evolution of anti-evolution policies in Science. The concept is simple and incredibly clever: use tools developed for studying evolutionary relationships in biology to study the transmission of culture (i.e. the phylogenetics of memes).  In this case, Matzke explores the relationships among anti-evolution legislation in the decade since the Kitzmiller v. Dover court case. 

Matzke studied the text of more than 65 bills introduced to erode the teaching of evolution in classrooms. However, the most striking aspect of his results from my perspective are the implications for teaching students about global climate change. In essence, he finds that the introduction of a policy in Louisiana in 2006 is the origin of a much broader change in legislation, in that it now simultaneously targets evolution, human cloning and global warming. By including human cloning and global warming, the authors can deflect the idea that the reason to not teach evolution is founded solely on religious principles, which has been found to be unconstitutional. This should serve as a warning for science educators of all shapes and sizes. 

It is not surprising that the anti-evolution movement  continues to evolve. It is ironic that the tools developed to study evolution might contribute to the movement's undoing. 

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The Future of the Field Guide

8/6/2015

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Paper has its limits. For instance, a paper field guide: 

-Can only include so much information before it is no longer a field guide and instead a desk reference.

-Can only have the information organized in one way, with one or two indices at the rear to guide the user to the information they are looking for.

-Can only be updated when the author and publisher choose to release a new edition.

-Can only be published and distributed in one, or at most two, languages at a time.

This week in the Books et al. section of Science, I explore some of the incredible opportunities for re-imagining how we construct field guides made possible by the advent of mobile technology. I do so through the lens of the fantastic new field guide Map of Life, one of the most impressive efforts to provide on-demand access to biodiversity information. This is the first time that Science has reviewed a mobile application; there is no doubt in my mind that this will not be the last time.

The review is by no means exhaustive in exploring all of the important considerations that go into making these applications and I am looking forward to many interesting discussions as we push these ideas forward.

My thanks to Walter Jetz and Rob Guralnick for providing additional information on Map of Life and to a host of colleagues including Ken Feeley, Brian Enquist, Jens-Christian Svenning, and Chelsea Little for feedback on the review.

Goldsmith, G.R. 2015. The field guide, rebooted. Science 349: 594.


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